Dataset Viewer
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example_id
string
messages
list
task_type
string
split
string
graph_unit_id
string
difficulty
int32
hop_count
int32
source_node_ids
list
source_edge_ids
list
source_triples
list
answer_entity_ids
list
relation_ids
list
negative_strategy
string
generation_mode
string
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string
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string
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metadata
string
c625c56dcd08d55403910edac484e6c3aebc854e9eabc9db080ec489a5cd95f8
[ { "content": "Which symptom is associated with asthma?", "role": "user" }, { "content": "Dyspnea", "role": "assistant" } ]
atomic_qa
train
de399cd19963985eb0b99088273bf20a3422961c203a282e841afc283f5b3cdd
1
1
[ "Disease::DOID:2841", "Symptom::D004417" ]
[ "c701b50530a95e47902e05c83b1039cdf0981ceee9a30f017f54a779fb871a2e" ]
[ { "edge_id": "c701b50530a95e47902e05c83b1039cdf0981ceee9a30f017f54a779fb871a2e", "source_id": "Disease::DOID:2841", "source_name": "asthma", "relation_id": "Disease-presents-Symptom", "target_id": "Symptom::D004417", "target_name": "Dyspnea" } ]
[ "Symptom::D004417" ]
[ "Disease-presents-Symptom" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "MeSH" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
2f60c130915d7c1248dcb4dc31aca041429c032de39e2baf420d1a83661144a0
[ { "content": "Which compound belongs to the pharmacologic class of Bile-acid Binding Activity?", "role": "user" }, { "content": "Colestipol", "role": "assistant" } ]
atomic_qa
train
21bd693f955b83fa777965b1a631457b24fcbde39cd113e526cfcce59425a0d2
1
1
[ "Pharmacologic Class::N0000175365", "Compound::DB00375" ]
[ "6956dd5dec22fd2076c1fdc720d36013a791967b7f28e37c84a1d4928f2d31aa" ]
[ { "edge_id": "6956dd5dec22fd2076c1fdc720d36013a791967b7f28e37c84a1d4928f2d31aa", "source_id": "Pharmacologic Class::N0000175365", "source_name": "Bile-acid Binding Activity", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00375", "target_name": "Colestipol"...
[ "Compound::DB00375" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 12}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
576b45744fc8be5a4c78194ad983ca39ba56cd1617eeec37d728ea2460b63395
[ { "content": "What disease is treated with Timolol?", "role": "user" }, { "content": "hypertension", "role": "assistant" } ]
atomic_qa
train
3737b1a46ec39609af3f2d55fa8059deb1093d207b3e14df53c8db11c2e3a045
1
1
[ "Compound::DB00373", "Disease::DOID:10763" ]
[ "f04603a247302aeacb1da4b6599df89f5b132a9070f1e066dcac4e8c50a16e9d" ]
[ { "edge_id": "f04603a247302aeacb1da4b6599df89f5b132a9070f1e066dcac4e8c50a16e9d", "source_id": "Compound::DB00373", "source_name": "Timolol", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:10763", "target_name": "hypertension" } ]
[ "Disease::DOID:10763" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
c463a92de1a1dcf75b24fcf48c9aaae3025441115f411aa9a4187557ed3790da
[ { "content": "Which disease resembles gestational diabetes?", "role": "user" }, { "content": "Type 1 diabetes mellitus", "role": "assistant" } ]
atomic_qa
train
3e41babd069b5ddca38e533957355fa9070cbdb8d040fb25c2ca5d24f0b32e36
1
1
[ "Disease::DOID:11714", "Disease::DOID:9744" ]
[ "5eafaad4f627775e7d074a225c0b4cabbff1acdd200046e713aa1dc83568c1fa" ]
[ { "edge_id": "5eafaad4f627775e7d074a225c0b4cabbff1acdd200046e713aa1dc83568c1fa", "source_id": "Disease::DOID:11714", "source_name": "gestational diabetes", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:9744", "target_name": "type 1 diabetes mellitus" } ]
[ "Disease::DOID:9744" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
fd9437f0157b92f371f65463f110a148841f37eca41d67228506c8eaa1b0295b
[ { "content": "What symptom can IgA glomerulonephritis present with?", "role": "user" }, { "content": "Purpura, Thrombocytopenic, Idiopathic", "role": "assistant" } ]
atomic_qa
train
912c23111e5051ccf7023d22fdb5b8c94da8f42ad49ac004bde6b083ea31fbc5
1
1
[ "Disease::DOID:2986", "Symptom::D016553" ]
[ "0c1128961a630ded79d2632fc64f7bced4875b2eb87e82a4cace10ee6f98b349" ]
[ { "edge_id": "0c1128961a630ded79d2632fc64f7bced4875b2eb87e82a4cace10ee6f98b349", "source_id": "Disease::DOID:2986", "source_name": "IgA glomerulonephritis", "relation_id": "Disease-presents-Symptom", "target_id": "Symptom::D016553", "target_name": "Purpura, Thrombocytopenic, Idiopathic" } ...
[ "Symptom::D016553" ]
[ "Disease-presents-Symptom" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "MeSH" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
1bd18ed2e1b3253b200b09940f4fd36077ae424c574e89a256ae4b04926c224f
[ { "content": "Which disease does Digoxin palliate symptoms of?", "role": "user" }, { "content": "dilated cardiomyopathy", "role": "assistant" } ]
atomic_qa
train
a55f1229d3e8d5aba58c51d60a2d171bb31cd4ddd58f19e39bc72b640273aa6c
1
1
[ "Compound::DB00390", "Disease::DOID:12930" ]
[ "37cb8ffa09d990e6c65d2640b92580bb2352f00a203dd272a0ea2ca4690d93b0" ]
[ { "edge_id": "37cb8ffa09d990e6c65d2640b92580bb2352f00a203dd272a0ea2ca4690d93b0", "source_id": "Compound::DB00390", "source_name": "Digoxin", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:12930", "target_name": "dilated cardiomyopathy" } ]
[ "Disease::DOID:12930" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
525142e0096e41ae57ee3219730292c7e19b10385d5052d27c884b3ca68b7ab7
[ { "content": "Which disease is relieved by flurbiprofen?", "role": "user" }, { "content": "Osteoarthritis", "role": "assistant" } ]
atomic_qa
train
04800b81137be26b8ff984aca94020e21bfdb97561b64eb7f08d704883057f02
1
1
[ "Compound::DB00712", "Disease::DOID:8398" ]
[ "34a9edeb8d4fb72cef8b4cb42ad983de1c61eea040ab6193a218504e6c21d1ca" ]
[ { "edge_id": "34a9edeb8d4fb72cef8b4cb42ad983de1c61eea040ab6193a218504e6c21d1ca", "source_id": "Compound::DB00712", "source_name": "Flurbiprofen", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:8398", "target_name": "osteoarthritis" } ]
[ "Disease::DOID:8398" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
088726d4dfcda9192679ad36cf181e5ea674398b6d4704b8a7c8893d8eb65021
[ { "content": "Which disease does imipramine palliate symptoms of?", "role": "user" }, { "content": "attention deficit hyperactivity disorder", "role": "assistant" } ]
atomic_qa
train
7750683a5f126a139bc6a960b19eb7049c7ee4bee7cf844ef73f3ab0c5537019
1
1
[ "Compound::DB00458", "Disease::DOID:1094" ]
[ "583adb98caae93756e848cf93f71e0a81823f85a4e5ec8dc6f4e3faa02483c82" ]
[ { "edge_id": "583adb98caae93756e848cf93f71e0a81823f85a4e5ec8dc6f4e3faa02483c82", "source_id": "Compound::DB00458", "source_name": "Imipramine", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:1094", "target_name": "attention deficit hyperactivity disorder" } ]
[ "Disease::DOID:1094" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
ddbc12e0ddf949745d7ca19018a4b319daa6dd80dd6026605bfc0eefef8d4a06
[ { "content": "Which compound is included in the pharmacologic class Vinca Alkaloids?", "role": "user" }, { "content": "Vinblastine", "role": "assistant" } ]
atomic_qa
train
c2c0b6f0dca14ce4a6069494faaa40771fa0a637289bd25548c98db3ffaba4c4
1
1
[ "Pharmacologic Class::N0000007780", "Compound::DB00570" ]
[ "dfb43590f3986a04b15bf030f934158aff2ade93556d73b15f1ba8009babace3" ]
[ { "edge_id": "dfb43590f3986a04b15bf030f934158aff2ade93556d73b15f1ba8009babace3", "source_id": "Pharmacologic Class::N0000007780", "source_name": "Vinca Alkaloids", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00570", "target_name": "Vinblastine" } ]
[ "Compound::DB00570" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
460fffd29e39a4781757485478dcac9a6b050508cfe8557e10b5720f86b84d7e
[ { "content": "Which disease is treated with Fluocinolone Acetonide?", "role": "user" }, { "content": "atopic dermatitis", "role": "assistant" } ]
atomic_qa
train
ec0ea96390d209fef1a8fdf3008a5e519382aeddafd84e179f9867a826fbefe0
1
1
[ "Compound::DB00591", "Disease::DOID:3310" ]
[ "b92a31c3b23e129a15c3094c71f45a56280220d0aa3d86378078966561a2d0c2" ]
[ { "edge_id": "b92a31c3b23e129a15c3094c71f45a56280220d0aa3d86378078966561a2d0c2", "source_id": "Compound::DB00591", "source_name": "Fluocinolone Acetonide", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:3310", "target_name": "atopic dermatitis" } ]
[ "Disease::DOID:3310" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
b2b63dda0c21b5cdf1d07754b35f8ca722436c03edf3f8d5fafc43f402987091
[ { "content": "Which compound belongs to the pharmacologic class Sulfonamides?", "role": "user" }, { "content": "Acetazolamide", "role": "assistant" } ]
atomic_qa
train
966711f026d3f9db936db6e77eb41f841a2330a2c0f1792c8a2c8d57c47cf268
1
1
[ "Pharmacologic Class::N0000008048", "Compound::DB00819" ]
[ "b039f2e3a0c45be232fed30f8e0932bc37663fe70ab4a8cf7dd6670795b06957" ]
[ { "edge_id": "b039f2e3a0c45be232fed30f8e0932bc37663fe70ab4a8cf7dd6670795b06957", "source_id": "Pharmacologic Class::N0000008048", "source_name": "Sulfonamides", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00819", "target_name": "Acetazolamide" } ]
[ "Compound::DB00819" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
07853f037df8944dc6bdfe6850e28428a0ff1069db363becf340617d194cc466
[ { "content": "Which disease resembles ovarian cancer?", "role": "user" }, { "content": "vulva cancer", "role": "assistant" } ]
atomic_qa
train
ad6b84a22c59557eaa3f6ac5d9eced35eba97625dea62450cc3710beb46fecb2
1
1
[ "Disease::DOID:2394", "Disease::DOID:1245" ]
[ "c671d53e60d864e60f45e5f141b8626aa6b336655230334aac45891f7d4efcdb" ]
[ { "edge_id": "c671d53e60d864e60f45e5f141b8626aa6b336655230334aac45891f7d4efcdb", "source_id": "Disease::DOID:2394", "source_name": "ovarian cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:1245", "target_name": "vulva cancer" } ]
[ "Disease::DOID:1245" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
6a48ddbae589d9d247303035310204c9359b7651e8f7604cd72c2f70f779bdb3
[ { "content": "Which gene is regulated by TRAF2?", "role": "user" }, { "content": "INPP4B", "role": "assistant" } ]
atomic_qa
train
747a288bcbea02b98074baded23f38940e0f89e3a758f1a601fe9c44fc58adb9
1
1
[ "Gene::7186", "Gene::8821" ]
[ "6b157c67c0f81916ebceeec6765b9bd18a9ffe693b0a3af4171de9d001536396" ]
[ { "edge_id": "6b157c67c0f81916ebceeec6765b9bd18a9ffe693b0a3af4171de9d001536396", "source_id": "Gene::7186", "source_name": "TRAF2", "relation_id": "Gene-regulates-Gene", "target_id": "Gene::8821", "target_name": "INPP4B" } ]
[ "Gene::8821" ]
[ "Gene-regulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Entrez Gene", "LINCS L1000" ]
[ "CC0 1.0", "UNSPECIFIED" ]
{}
818b992584a1333c2d95c42da3244cf5501a2f1d6c730c411e8c28ca994081c9
[ { "content": "What disease is treated with the compound Zoledronate?", "role": "user" }, { "content": "osteoporosis", "role": "assistant" } ]
atomic_qa
train
87127dab6a41b1bdeb5a75250d32c4cc83ddcc371a86f53f3bc1c8cea37ae6ec
1
1
[ "Compound::DB00399", "Disease::DOID:11476" ]
[ "440d910ce5fa3d2134c70a0d15f66e231b3cb6e2b6517c86704e3cb097628876" ]
[ { "edge_id": "440d910ce5fa3d2134c70a0d15f66e231b3cb6e2b6517c86704e3cb097628876", "source_id": "Compound::DB00399", "source_name": "Zoledronate", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:11476", "target_name": "osteoporosis" } ]
[ "Disease::DOID:11476" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
c0e76b2eba9954f983cc49c053eafe406f97eb27d658caee724a3470442fbb7a
[ { "content": "What disease is prednisone used to treat?", "role": "user" }, { "content": "Ulcerative colitis", "role": "assistant" } ]
atomic_qa
train
6279061d20b3f4422ea0b2846ddc375b4ead354983afd3460bcb5ccd0a96c640
1
1
[ "Compound::DB00635", "Disease::DOID:8577" ]
[ "e71e808e538ec7e122951de0c2ed01eef552f5514c6c435d0ce454b0cedcb1a4" ]
[ { "edge_id": "e71e808e538ec7e122951de0c2ed01eef552f5514c6c435d0ce454b0cedcb1a4", "source_id": "Compound::DB00635", "source_name": "Prednisone", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:8577", "target_name": "ulcerative colitis" } ]
[ "Disease::DOID:8577" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
b1aadff0cc47ee9a695730b306f70dde1ecd29aa4795d32c1e2bfe06f34d0665
[ { "content": "Which gene evolutionarily covaries with PDP1?", "role": "user" }, { "content": "TRIM11", "role": "assistant" } ]
atomic_qa
train
5f7e0f4805eb426132a0f04f2549feeeff212702626467703799638818394576
1
1
[ "Gene::54704", "Gene::81559" ]
[ "5388f944a1ae07956f8db97f32802a078dedd3b39055de84689d3d9ba489a936" ]
[ { "edge_id": "5388f944a1ae07956f8db97f32802a078dedd3b39055de84689d3d9ba489a936", "source_id": "Gene::54704", "source_name": "PDP1", "relation_id": "Gene-covaries-Gene", "target_id": "Gene::81559", "target_name": "TRIM11" } ]
[ "Gene::81559" ]
[ "Gene-covaries-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "ERC", "Entrez Gene" ]
[ "CC0 1.0", "UNSPECIFIED" ]
{}
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[ { "content": "Which molecular function does the product of DHRS12 participate in?", "role": "user" }, { "content": "Oxidoreductase activity", "role": "assistant" } ]
atomic_qa
train
a4b8e97ae159a217afae77a74e2c9404cbc0a04a3a6784bed7bfada3971533a9
1
1
[ "Gene::79758", "Molecular Function::GO:0016491" ]
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[ { "edge_id": "381826ff8cd198ff1c54121afc902ae1e3f3761e1d8397520c3ebcd4122d1062", "source_id": "Gene::79758", "source_name": "DHRS12", "relation_id": "Gene-participates-Molecular Function", "target_id": "Molecular Function::GO:0016491", "target_name": "oxidoreductase activity" } ]
[ "Molecular Function::GO:0016491" ]
[ "Gene-participates-Molecular Function" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 12}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Entrez Gene", "Gene Ontology", "NCBI gene2go" ]
[ "CC BY 4.0", "CC0 1.0" ]
{}
80f3bedb1cdea4ea40403c73c946e893cd5c66b0880c009e66765fc80b0c6a85
[ { "content": "Which compound belongs to the pharmacologic class Reversed Anticoagulation Activity?", "role": "user" }, { "content": "Phylloquinone", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Pharmacologic Class::N0000175982", "Compound::DB01022" ]
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[ { "edge_id": "07804469a91a1e0e60bd5cc31fbf56f5987bdbb03f42aebfb934195a2509d544", "source_id": "Pharmacologic Class::N0000175982", "source_name": "Reversed Anticoagulation Activity", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB01022", "target_name": "Phyl...
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[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
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[ { "content": "Which gene is associated with IgA glomerulonephritis?", "role": "user" }, { "content": "EZH2", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Disease::DOID:2986", "Gene::2146" ]
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[ { "edge_id": "11954a6afe5a06ff109fdcf10b2e08b9e671c1c36ab2245853424fa36a72b051", "source_id": "Disease::DOID:2986", "source_name": "IgA glomerulonephritis", "relation_id": "Disease-associates-Gene", "target_id": "Gene::2146", "target_name": "EZH2" } ]
[ "Gene::2146" ]
[ "Disease-associates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "UNSPECIFIED" ]
[ "CC BY 3.0", "CC0 1.0", "ODbL 1.0" ]
{}
0aad9f8c0b25088ec93819ec42ee81c29a32e4f75a768c29e67f46fc96283ad7
[ { "content": "Which disease is dextromethorphan used to palliate symptoms of?", "role": "user" }, { "content": "Amyotrophic lateral sclerosis", "role": "assistant" } ]
atomic_qa
train
6ea06973cefad478c1d898451153b847a806ae8eec417d0c1a86b8465a2e1c93
1
1
[ "Compound::DB00514", "Disease::DOID:332" ]
[ "e2bc12269396aaee4f22428683ddf6404ecc97f0218f9ca4e505494ea5ddfff4" ]
[ { "edge_id": "e2bc12269396aaee4f22428683ddf6404ecc97f0218f9ca4e505494ea5ddfff4", "source_id": "Compound::DB00514", "source_name": "Dextromethorphan", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:332", "target_name": "amyotrophic lateral sclerosis" } ]
[ "Disease::DOID:332" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 12}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
eebad0728672fa713c06059142ba022cc23d06dd5ccf9d74d1f2cff38e5ada1d
[ { "content": "Which symptom is associated with schizophrenia?", "role": "user" }, { "content": "Flushing", "role": "assistant" } ]
atomic_qa
train
48ac4fc457f98542cbd40d2c7990321610e0565a0621ac5c920071001c721248
1
1
[ "Disease::DOID:5419", "Symptom::D005483" ]
[ "1af0be3d76e515551acc229f4bd35ca3224f2c8d496becb7887deeb672b69b6c" ]
[ { "edge_id": "1af0be3d76e515551acc229f4bd35ca3224f2c8d496becb7887deeb672b69b6c", "source_id": "Disease::DOID:5419", "source_name": "schizophrenia", "relation_id": "Disease-presents-Symptom", "target_id": "Symptom::D005483", "target_name": "Flushing" } ]
[ "Symptom::D005483" ]
[ "Disease-presents-Symptom" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "MeSH" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
63f4c0263b72d45717481fa88df76716d3277c12d5dd8d6996ac7b47f611531b
[ { "content": "Which gene is downregulated after exposure to Perhexiline?", "role": "user" }, { "content": "CDC25A", "role": "assistant" } ]
atomic_qa
train
a99aade746ed77d5a46ec0b7bf311578be407fef2f1fa1e69a159da2c03ac28e
1
1
[ "Compound::DB01074", "Gene::993" ]
[ "db51354d0543afb9f482cb8c0594afdf8ac9f077fd5555c2b82e8681bb2a6077" ]
[ { "edge_id": "db51354d0543afb9f482cb8c0594afdf8ac9f077fd5555c2b82e8681bb2a6077", "source_id": "Compound::DB01074", "source_name": "Perhexiline", "relation_id": "Compound-downregulates-Gene", "target_id": "Gene::993", "target_name": "CDC25A" } ]
[ "Gene::993" ]
[ "Compound-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "LINCS L1000" ]
[ "CC BY-NC 4.0", "CC0 1.0", "UNSPECIFIED" ]
{}
6f95aadcd8b5ed6eef8431769679e4fbc5d981c3b4e27c3c193d85a517a4a7d0
[ { "content": "Which gene is over-expressed in the cerebellum in post-juvenile adult human samples?", "role": "user" }, { "content": "MLC1", "role": "assistant" } ]
atomic_qa
train
0b59e4cbb09b4818ef26444e2bf625d59fa6e84864b3dd7c5d333ff8a95e4db9
1
1
[ "Anatomy::UBERON:0002037", "Gene::23209" ]
[ "49a316257692dfbba5dc87da60bb850278b9dd28f4a73ffe6d61f91e63144993" ]
[ { "edge_id": "49a316257692dfbba5dc87da60bb850278b9dd28f4a73ffe6d61f91e63144993", "source_id": "Anatomy::UBERON:0002037", "source_name": "cerebellum", "relation_id": "Anatomy-upregulates-Gene", "target_id": "Gene::23209", "target_name": "MLC1" } ]
[ "Gene::23209" ]
[ "Anatomy-upregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 13}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Bgee", "Entrez Gene", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0", "UNSPECIFIED" ]
{}
f38e769a8bf11c5dfd29aed6630641d5f7b8fd54e355a0fb0f2d7d2d8fc49623
[ { "content": "Which gene is upregulated by vincristine?", "role": "user" }, { "content": "CDC42BPB", "role": "assistant" } ]
atomic_qa
train
688ccace0967451d9d86e239c1928f837c710ce5fbd624528a0a7d7412f3ac46
1
1
[ "Compound::DB00541", "Gene::9578" ]
[ "22337336f3c9308a2111e0926b6190aacc3f382a29cf687cf4cba14411ac6f74" ]
[ { "edge_id": "22337336f3c9308a2111e0926b6190aacc3f382a29cf687cf4cba14411ac6f74", "source_id": "Compound::DB00541", "source_name": "Vincristine", "relation_id": "Compound-upregulates-Gene", "target_id": "Gene::9578", "target_name": "CDC42BPB" } ]
[ "Gene::9578" ]
[ "Compound-upregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "LINCS L1000" ]
[ "CC BY-NC 4.0", "CC0 1.0", "UNSPECIFIED" ]
{}
3b5e731a4316726ffd3928db2513b7777e44066f09af88f0d2458433ab35746d
[ { "content": "Which cellular component does the product of MEFV participate in?", "role": "user" }, { "content": "vacuole", "role": "assistant" } ]
atomic_qa
train
6510157b4b1eeb687f5c5dda7dfea1b82f2ab9a7c73133c28490c37ce8920333
1
1
[ "Gene::4210", "Cellular Component::GO:0005773" ]
[ "c2cc0a8377d5e3f88ba03ff38421ea2ace3a2c9c47056d49170ceccc02763aa7" ]
[ { "edge_id": "c2cc0a8377d5e3f88ba03ff38421ea2ace3a2c9c47056d49170ceccc02763aa7", "source_id": "Gene::4210", "source_name": "MEFV", "relation_id": "Gene-participates-Cellular Component", "target_id": "Cellular Component::GO:0005773", "target_name": "vacuole" } ]
[ "Cellular Component::GO:0005773" ]
[ "Gene-participates-Cellular Component" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Entrez Gene", "Gene Ontology", "NCBI gene2go" ]
[ "CC BY 4.0", "CC0 1.0" ]
{}
06c224bb985cecbc914d1ba4ba5cb39c198753b50e9de788579b0b20bc12257b
[ { "content": "Which compound is chemically similar to Warfarin?", "role": "user" }, { "content": "Ketoprofen", "role": "assistant" } ]
atomic_qa
train
aaef55eda6f143c96440560c5fd13334e93f996bc428501c8f5ee848382b1279
1
1
[ "Compound::DB00682", "Compound::DB01009" ]
[ "a0fa7e4063b9bf8d48ec265a5496d172151270c3f7aa042224fe6213e6b24b3e" ]
[ { "edge_id": "a0fa7e4063b9bf8d48ec265a5496d172151270c3f7aa042224fe6213e6b24b3e", "source_id": "Compound::DB00682", "source_name": "Warfarin", "relation_id": "Compound-resembles-Compound", "target_id": "Compound::DB01009", "target_name": "Ketoprofen" } ]
[ "Compound::DB01009" ]
[ "Compound-resembles-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Dice similarity of ECFPs", "DrugBank" ]
[ "CC BY-NC 4.0", "CC0 1.0" ]
{}
dbf57a0995031521da8648472794be0b218f723521d485a06be0df3ec84240ee
[ { "content": "Which disease is palliated by aprepitant?", "role": "user" }, { "content": "Breast cancer", "role": "assistant" } ]
atomic_qa
train
77660988193ad41c9d70fe4b076fb4682db7c1c5811086d010e24f173c4e0775
1
1
[ "Compound::DB00673", "Disease::DOID:1612" ]
[ "3e6d50375ff3e38d9afc66f6c7ff40b9a998e4dc3809fc149bed6567b2fed35f" ]
[ { "edge_id": "3e6d50375ff3e38d9afc66f6c7ff40b9a998e4dc3809fc149bed6567b2fed35f", "source_id": "Compound::DB00673", "source_name": "Aprepitant", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:1612", "target_name": "breast cancer" } ]
[ "Disease::DOID:1612" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
41ac3e82bebb31a0522b10619998efd2fa554dcab11369b167d41df194f135eb
[ { "content": "Which disease is treated with sulfasalazine?", "role": "user" }, { "content": "Crohn's disease", "role": "assistant" } ]
atomic_qa
train
95414fcdea7dd01bc5f5b98e2ef413aff6ce96843fad0fb54a844513200f7fe2
1
1
[ "Compound::DB00795", "Disease::DOID:8778" ]
[ "41deafdb9817fc325e0ed8a17bc8ad5d4a1da0e0de482ecdeee01e6fe27cac4b" ]
[ { "edge_id": "41deafdb9817fc325e0ed8a17bc8ad5d4a1da0e0de482ecdeee01e6fe27cac4b", "source_id": "Compound::DB00795", "source_name": "Sulfasalazine", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:8778", "target_name": "Crohn's disease" } ]
[ "Disease::DOID:8778" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
4adbd839ef1b5965c9ec33a076b9abd3345c7d1d89216a3da8361ae6a20705b3
[ { "content": "Which disease is treated by Goserelin?", "role": "user" }, { "content": "prostate cancer", "role": "assistant" } ]
atomic_qa
train
588a852651b8c4e0b1ab6adc930fbf964dd88e281234f9bb97cae04500a6ee2d
1
1
[ "Compound::DB00014", "Disease::DOID:10283" ]
[ "5d802c338f9d6d93594c511974e1983828fce6441b0c3ef76f4b347927fb31b4" ]
[ { "edge_id": "5d802c338f9d6d93594c511974e1983828fce6441b0c3ef76f4b347927fb31b4", "source_id": "Compound::DB00014", "source_name": "Goserelin", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:10283", "target_name": "prostate cancer" } ]
[ "Disease::DOID:10283" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
bd054b6b7322e77057ff7302691acd2765ff73830dc7ed46c08903b9df4ae1d2
[ { "content": "Which disease is palliated by Perphenazine?", "role": "user" }, { "content": "Gilles de la Tourette syndrome", "role": "assistant" } ]
atomic_qa
train
a5cf8eda623e4f319c890f7b3d56f854c68a3047fed4d2518cfc7f8c35f3c64d
1
1
[ "Compound::DB00850", "Disease::DOID:11119" ]
[ "d3bca6a1e8cd5403a6180e3efef1dd39fc1ec0c48d743f10412b3f04e05a7eb5" ]
[ { "edge_id": "d3bca6a1e8cd5403a6180e3efef1dd39fc1ec0c48d743f10412b3f04e05a7eb5", "source_id": "Compound::DB00850", "source_name": "Perphenazine", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:11119", "target_name": "Gilles de la Tourette syndrome" } ]
[ "Disease::DOID:11119" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
b89f728762b92a8347884a3d7aad5b971115d84aed021824e6b278e9b5e14a92
[ { "content": "Which disease is Carboplatin used to treat?", "role": "user" }, { "content": "testicular cancer", "role": "assistant" } ]
atomic_qa
train
045d69ea55fe82a00a8dccee41ca974b7f908ed9f6465a96b446b88428c913bd
1
1
[ "Compound::DB00958", "Disease::DOID:2998" ]
[ "ff6e8cc9387b583b0d89a68d73e62e6cf6bb248cc8ebd2e61b2f41cfe51ce4de" ]
[ { "edge_id": "ff6e8cc9387b583b0d89a68d73e62e6cf6bb248cc8ebd2e61b2f41cfe51ce4de", "source_id": "Compound::DB00958", "source_name": "Carboplatin", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:2998", "target_name": "testicular cancer" } ]
[ "Disease::DOID:2998" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
93dec2afc3d4481ce20e367d19435ed4b96d2cb57b54ed05dbb3d7fc372ce875
[ { "content": "Which compound chemically resembles Fluocinonide?", "role": "user" }, { "content": "Fluticasone Propionate", "role": "assistant" } ]
atomic_qa
train
e98d934dfc7dd584c9b28a8eb33202f1c812cd6ef6f27fdc0d6a6ecb00037628
1
1
[ "Compound::DB01047", "Compound::DB00588" ]
[ "4b1b31f8b9f7363098738977bf4981f2c35bf786a5e038cda12ab06e24d784b4" ]
[ { "edge_id": "4b1b31f8b9f7363098738977bf4981f2c35bf786a5e038cda12ab06e24d784b4", "source_id": "Compound::DB01047", "source_name": "Fluocinonide", "relation_id": "Compound-resembles-Compound", "target_id": "Compound::DB00588", "target_name": "Fluticasone Propionate" } ]
[ "Compound::DB00588" ]
[ "Compound-resembles-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Dice similarity of ECFPs", "DrugBank" ]
[ "CC BY-NC 4.0", "CC0 1.0" ]
{}
5f2a2b26ca56c3df9ac59a6723b572f22b3851126b7e5b8e35142d7d43af57e6
[ { "content": "Which gene is upregulated in colon cancer?", "role": "user" }, { "content": "CLEC5A", "role": "assistant" } ]
atomic_qa
train
68f4811d1c9368d263f242a0405f028172b6339b49f383374cccdbfd2bb96b32
1
1
[ "Disease::DOID:219", "Gene::23601" ]
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none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
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{}
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[ { "content": "What disease is treated with Glipizide?", "role": "user" }, { "content": "Type 2 diabetes mellitus", "role": "assistant" } ]
atomic_qa
train
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1
1
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[ "Disease::DOID:9352" ]
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none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
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{}
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[ { "content": "Which gene is over-expressed in samples of pancreatic cancer?", "role": "user" }, { "content": "E2F3", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Disease::DOID:1793", "Gene::1871" ]
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[ "Gene::1871" ]
[ "Disease-upregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "STARGEO" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
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[ { "content": "Which compound is included in the pharmacologic class Cytochrome P450 1A Inducers?", "role": "user" }, { "content": "Albendazole", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Pharmacologic Class::N0000191624", "Compound::DB00518" ]
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[ { "edge_id": "39f459e06a20bb850370a03fb8d28fd4d173adacd0eafa01d9222347f2ca8b10", "source_id": "Pharmacologic Class::N0000191624", "source_name": "Cytochrome P450 1A Inducers", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00518", "target_name": "Albendazol...
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none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 13}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
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{}
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[ { "content": "Which gene is associated with melanoma?", "role": "user" }, { "content": "TNF", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Disease::DOID:1909", "Gene::7124" ]
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[ { "edge_id": "911681ebe45d97da67446e0d688b0c91f037e1cf8c88a26295d235f93fe4910b", "source_id": "Disease::DOID:1909", "source_name": "melanoma", "relation_id": "Disease-associates-Gene", "target_id": "Gene::7124", "target_name": "TNF" } ]
[ "Gene::7124" ]
[ "Disease-associates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "UNSPECIFIED" ]
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{}
7aecf06a484a9d415891c986b8546bc200d6a283e3ac6210c3d2a29fd48205c1
[ { "content": "Which gene is upregulated by Mebendazole?", "role": "user" }, { "content": "JMJD6", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Compound::DB00643", "Gene::23210" ]
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[ { "edge_id": "a83e54061a5af6698b1e52a40b1b9437ff43c585efcdfe31e0111b0c2b5fe15a", "source_id": "Compound::DB00643", "source_name": "Mebendazole", "relation_id": "Compound-upregulates-Gene", "target_id": "Gene::23210", "target_name": "JMJD6" } ]
[ "Gene::23210" ]
[ "Compound-upregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "LINCS L1000" ]
[ "CC BY-NC 4.0", "CC0 1.0", "UNSPECIFIED" ]
{}
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[ { "content": "Which disease is treated with Docetaxel?", "role": "user" }, { "content": "skin cancer", "role": "assistant" } ]
atomic_qa
train
ea99f0fb1f964b626b9c3c04ca052f99e22685064ebe28974a7efbba7d8041ca
1
1
[ "Compound::DB01248", "Disease::DOID:4159" ]
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[ { "edge_id": "ffc9d14df859ca1bbc1fd5b1341471508146fed1d507a55385659f617a5b8e2a", "source_id": "Compound::DB01248", "source_name": "Docetaxel", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:4159", "target_name": "skin cancer" } ]
[ "Disease::DOID:4159" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
831baf9963b3accb125626696929e04320db0a92c2fcddd9fa464a1b3721d5ef
[ { "content": "Which gene evolutionarily covaries with LANCL3?", "role": "user" }, { "content": "CAMKV", "role": "assistant" } ]
atomic_qa
train
e5eb253fb924c2c65ee45982a03399960b17c4c77d8ee47e79314eb9f67e2a2d
1
1
[ "Gene::347404", "Gene::79012" ]
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[ { "edge_id": "78f982e6cd621e3691f02524f671d3adc34cad320a6e198eb9c62cfb346132bd", "source_id": "Gene::347404", "source_name": "LANCL3", "relation_id": "Gene-covaries-Gene", "target_id": "Gene::79012", "target_name": "CAMKV" } ]
[ "Gene::79012" ]
[ "Gene-covaries-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "ERC", "Entrez Gene" ]
[ "CC0 1.0", "UNSPECIFIED" ]
{}
2b7085394200b4b906f774818e29609b63363a0d38cd42894b377e8901ba4399
[ { "content": "Which gene is downregulated by simvastatin?", "role": "user" }, { "content": "NOLC1", "role": "assistant" } ]
atomic_qa
train
2ff583045634a21fde2fdadaf6305111605f1a01ff7ad24492c136386e748e94
1
1
[ "Compound::DB00641", "Gene::9221" ]
[ "665d991e516ea793420cf23d6946340cb16e2807537eaa6ff21279b905a9a46e" ]
[ { "edge_id": "665d991e516ea793420cf23d6946340cb16e2807537eaa6ff21279b905a9a46e", "source_id": "Compound::DB00641", "source_name": "Simvastatin", "relation_id": "Compound-downregulates-Gene", "target_id": "Gene::9221", "target_name": "NOLC1" } ]
[ "Gene::9221" ]
[ "Compound-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "LINCS L1000" ]
[ "CC BY-NC 4.0", "CC0 1.0", "UNSPECIFIED" ]
{}
dffa0a2cf145e93102cf80384552f9a67fafd6c98a4c260b2ce351a1a05b3b51
[ { "content": "Which disease is similar to cervical cancer?", "role": "user" }, { "content": "vaginal cancer", "role": "assistant" } ]
atomic_qa
train
fab86f85d7f986a5d2d6a836b7d02bc086527701a18f9b2aac025eeef3399b0f
1
1
[ "Disease::DOID:4362", "Disease::DOID:119" ]
[ "071264ca2168a9f1521248ac4bf24e24f39282966b9f9529d5ffe464c7e458ec" ]
[ { "edge_id": "071264ca2168a9f1521248ac4bf24e24f39282966b9f9529d5ffe464c7e458ec", "source_id": "Disease::DOID:4362", "source_name": "cervical cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:119", "target_name": "vaginal cancer" } ]
[ "Disease::DOID:119" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
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[ { "content": "What side effect can be caused by Cefdinir?", "role": "user" }, { "content": "Toxic epidermal necrolysis", "role": "assistant" } ]
atomic_qa
train
59478ff22008839f2758e7d3e5f8edd3311d560a2168ada0caa8a815e6f21cf2
1
1
[ "Compound::DB00535", "Side Effect::C0014518" ]
[ "714be300951e27d46bdc2239c7d0478ff8f2f192dc6155725168f338f70b9b26" ]
[ { "edge_id": "714be300951e27d46bdc2239c7d0478ff8f2f192dc6155725168f338f70b9b26", "source_id": "Compound::DB00535", "source_name": "Cefdinir", "relation_id": "Compound-causes-Side Effect", "target_id": "Side Effect::C0014518", "target_name": "Toxic epidermal necrolysis" } ]
[ "Side Effect::C0014518" ]
[ "Compound-causes-Side Effect" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "SIDER 4.1", "UMLS via SIDER 4.1" ]
[ "CC BY-NC 4.0", "CC BY-NC-SA 4.0" ]
{}
b5a2c38562ff9c6801dc0f867d385dd082f9830cce2ad2b3489bf44f7defb0dc
[ { "content": "Which gene is under-expressed in samples of Crohn's disease?", "role": "user" }, { "content": "AHNAK", "role": "assistant" } ]
atomic_qa
train
c87eaf0e52eeed9c6e2a00ea86b93b54316e764f71448cbc0a44a37d1e9fa432
1
1
[ "Disease::DOID:8778", "Gene::79026" ]
[ "d83647e4edec6e0a66011751fe5bcc8a00f4333688b19b4792003fa6f0c5795b" ]
[ { "edge_id": "d83647e4edec6e0a66011751fe5bcc8a00f4333688b19b4792003fa6f0c5795b", "source_id": "Disease::DOID:8778", "source_name": "Crohn's disease", "relation_id": "Disease-downregulates-Gene", "target_id": "Gene::79026", "target_name": "AHNAK" } ]
[ "Gene::79026" ]
[ "Disease-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "STARGEO" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
df2d32ea85b58a63a7f226813c00a5980200d2bb3dd8a5528c153771a8b9e86c
[ { "content": "Which compound belongs to the pharmacologic class Prostaglandins?", "role": "user" }, { "content": "Carboprost Tromethamine", "role": "assistant" } ]
atomic_qa
train
17f5d1fea50b53dbec9df103b8480510fbbae189fba815ef886af79c71d48d4c
1
1
[ "Pharmacologic Class::N0000007706", "Compound::DB00429" ]
[ "38791f309fc0fb4fd56310f9d07a89af845647fb03f75df019b1fb41b10769b1" ]
[ { "edge_id": "38791f309fc0fb4fd56310f9d07a89af845647fb03f75df019b1fb41b10769b1", "source_id": "Pharmacologic Class::N0000007706", "source_name": "Prostaglandins", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00429", "target_name": "Carboprost Tromethamine...
[ "Compound::DB00429" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
567822380e53a46a236905145c2554c40b5e8271a634fa59663553ebdaeaf4e7
[ { "content": "Which disease is treated with Prednisone?", "role": "user" }, { "content": "Crohn's disease", "role": "assistant" } ]
atomic_qa
train
c6b53dd650f6c6a2d33a9f4750ea8a7e8b3fc8d82623b830b3a9d7cb5b757297
1
1
[ "Compound::DB00635", "Disease::DOID:8778" ]
[ "973b95f274162cdab8355d075186ccbf490539d417a5d106e61175fca7fb271f" ]
[ { "edge_id": "973b95f274162cdab8355d075186ccbf490539d417a5d106e61175fca7fb271f", "source_id": "Compound::DB00635", "source_name": "Prednisone", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:8778", "target_name": "Crohn's disease" } ]
[ "Disease::DOID:8778" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
7266f18b6cfd56660386c0051b8710d9d3e97c194418dd375ac66d40d87d5293
[ { "content": "Which disease does Eletriptan palliate?", "role": "user" }, { "content": "migraine", "role": "assistant" } ]
atomic_qa
train
094107d6e5adaff05e5e8dba6cf5c9f5c315248840913238ff75f1d49d01d4cc
1
1
[ "Compound::DB00216", "Disease::DOID:6364" ]
[ "6f4005d36d46db7dfc229549bde439f81ab1777585d16863aaf2b9b40ea70a75" ]
[ { "edge_id": "6f4005d36d46db7dfc229549bde439f81ab1777585d16863aaf2b9b40ea70a75", "source_id": "Compound::DB00216", "source_name": "Eletriptan", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:6364", "target_name": "migraine" } ]
[ "Disease::DOID:6364" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 6}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
2eb046c0401fa3287296b73414382ed17c3b08cbf3a99f97198d67f513e4d4f4
[ { "content": "Which disease resembles germ cell cancer?", "role": "user" }, { "content": "Jejunal cancer", "role": "assistant" } ]
atomic_qa
train
47a14daadcee5b9267c5f6a7b0b4444b143aa9fb55850cef025fd1c1292fe386
1
1
[ "Disease::DOID:2994", "Disease::DOID:13499" ]
[ "eeb9d093778f03150c8a58d6a1ac0197af53fea59c9d7487a6b0e2626f822bea" ]
[ { "edge_id": "eeb9d093778f03150c8a58d6a1ac0197af53fea59c9d7487a6b0e2626f822bea", "source_id": "Disease::DOID:2994", "source_name": "germ cell cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:13499", "target_name": "jejunal cancer" } ]
[ "Disease::DOID:13499" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
220211e42141e4e07bf976bd0df0efa83605a26d0c9c897c38d99cf89678ac41
[ { "content": "Which gene is associated with multiple sclerosis?", "role": "user" }, { "content": "CNR1", "role": "assistant" } ]
atomic_qa
train
86200ce9afeeb56f90d77d12047037ce43c153506ec4e8d04d79b35a5712feda
1
1
[ "Disease::DOID:2377", "Gene::1268" ]
[ "7c890d7be31eba8b087a3694abfe7b4005759c350756de55f1a4154a7eac7ff3" ]
[ { "edge_id": "7c890d7be31eba8b087a3694abfe7b4005759c350756de55f1a4154a7eac7ff3", "source_id": "Disease::DOID:2377", "source_name": "multiple sclerosis", "relation_id": "Disease-associates-Gene", "target_id": "Gene::1268", "target_name": "CNR1" } ]
[ "Gene::1268" ]
[ "Disease-associates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "UNSPECIFIED" ]
[ "CC BY 3.0", "CC0 1.0", "UNSPECIFIED" ]
{}
938c1713945716addfcfeb10fb022a9ce054e30cf34e6f0a9dd9b66f74d9f297
[ { "content": "Which gene is under-expressed in the cardiac ventricle?", "role": "user" }, { "content": "TBC1D2B", "role": "assistant" } ]
atomic_qa
train
4f9e17c7cb6b046c64ebe1cdcee576a9bc23dd3e07bb2d648cbc7a6c4de399a8
1
1
[ "Anatomy::UBERON:0002082", "Gene::23102" ]
[ "2fae0c19ba8cc88d5ca3e970eef8085a14482d55416713d25a665b78ec4fbf7b" ]
[ { "edge_id": "2fae0c19ba8cc88d5ca3e970eef8085a14482d55416713d25a665b78ec4fbf7b", "source_id": "Anatomy::UBERON:0002082", "source_name": "cardiac ventricle", "relation_id": "Anatomy-downregulates-Gene", "target_id": "Gene::23102", "target_name": "TBC1D2B" } ]
[ "Gene::23102" ]
[ "Anatomy-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Bgee", "Entrez Gene", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0", "UNSPECIFIED" ]
{}
3c336e0f9e4ffce4a563def6fef94d7fdde266471b0bed905c368fcc2f760aea
[ { "content": "Which compound is included in the pharmacologic class Sigma-1 Receptor Agonists?", "role": "user" }, { "content": "Dextromethorphan", "role": "assistant" } ]
atomic_qa
train
3751266f21723d304b1bf188eefbcf90e27e6adae87dd587f95c31f6b5dcab13
1
1
[ "Pharmacologic Class::N0000182147", "Compound::DB00514" ]
[ "eadb072418f99613fe788d94d9b78a9ad1cc521994ace872ce020a7ea1c22e2a" ]
[ { "edge_id": "eadb072418f99613fe788d94d9b78a9ad1cc521994ace872ce020a7ea1c22e2a", "source_id": "Pharmacologic Class::N0000182147", "source_name": "Sigma-1 Receptor Agonists", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00514", "target_name": "Dextromethor...
[ "Compound::DB00514" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 12}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
54c50148395ebbe9808cf752af8039fb6127c1add070617ef70792acbaad7ff4
[ { "content": "Which disease resembles uterine fibroid?", "role": "user" }, { "content": "vulva cancer", "role": "assistant" } ]
atomic_qa
train
1069dc1e3cb33df2fb94f76bba72dd29c2619117c4310398ae36e267a1e229bd
1
1
[ "Disease::DOID:13223", "Disease::DOID:1245" ]
[ "ac9f5e1e7bb9d4facef488e9e70b2f73062021dde5fd26ea0fbc4d9032b5c34c" ]
[ { "edge_id": "ac9f5e1e7bb9d4facef488e9e70b2f73062021dde5fd26ea0fbc4d9032b5c34c", "source_id": "Disease::DOID:13223", "source_name": "uterine fibroid", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:1245", "target_name": "vulva cancer" } ]
[ "Disease::DOID:1245" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
8ccc7c2ac1e3b5373899093d70ec40477f4a8218b0570996f5fee3d9325618f6
[ { "content": "Which gene is bound by Promethazine?", "role": "user" }, { "content": "CALM2", "role": "assistant" } ]
atomic_qa
train
903c5f52675e541d7711ccb99a637d5df1561e18ca7af7c9788ec41f0f4d226d
1
1
[ "Compound::DB01069", "Gene::805" ]
[ "f4f069a3ab075731ab18992ffffa8c1b02c6241c9f3d89f78fb483211e851805" ]
[ { "edge_id": "f4f069a3ab075731ab18992ffffa8c1b02c6241c9f3d89f78fb483211e851805", "source_id": "Compound::DB01069", "source_name": "Promethazine", "relation_id": "Compound-binds-Gene", "target_id": "Gene::805", "target_name": "CALM2" } ]
[ "Gene::805" ]
[ "Compound-binds-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "UNSPECIFIED" ]
[ "CC BY-NC 4.0", "CC0 1.0" ]
{}
53281fefabd3c60d9a85cd368770fc017ec08bbc7929a3f73a7759d76fe780c9
[ { "content": "What disease resembles malignant mesothelioma?", "role": "user" }, { "content": "Peritoneum cancer", "role": "assistant" } ]
atomic_qa
train
4a658236321df1e79a7eac87b85a6d5a92967ee84e3b55bc5e641690c4851149
1
1
[ "Disease::DOID:1790", "Disease::DOID:1725" ]
[ "2666ed4d5570fa0c8e506f56bec9398ea4cf961d2a89ac34c7addd5bf812e82f" ]
[ { "edge_id": "2666ed4d5570fa0c8e506f56bec9398ea4cf961d2a89ac34c7addd5bf812e82f", "source_id": "Disease::DOID:1790", "source_name": "malignant mesothelioma", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:1725", "target_name": "peritoneum cancer" } ]
[ "Disease::DOID:1725" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
246ab7f90282fb16d1a2a01abc41539548d578f3656d4cbd06536baf719fd2bc
[ { "content": "Which disease resembles gestational diabetes?", "role": "user" }, { "content": "Metabolic syndrome X", "role": "assistant" } ]
atomic_qa
train
4751087179fc221a40e917948c2f8080078d0b78865a47113dc895f0def84b77
1
1
[ "Disease::DOID:11714", "Disease::DOID:14221" ]
[ "8d76d921309420fc8af9a4befcc370c9fc7205144013e0f04436f2335b7c49f4" ]
[ { "edge_id": "8d76d921309420fc8af9a4befcc370c9fc7205144013e0f04436f2335b7c49f4", "source_id": "Disease::DOID:11714", "source_name": "gestational diabetes", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:14221", "target_name": "metabolic syndrome X" } ]
[ "Disease::DOID:14221" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
6817bd2e4c5fe4b7a6ff493f4d92cc12245bd5eba1546e15d7369ee8ce289554
[ { "content": "Which gene is over-expressed in the urethra in post-juvenile adult human samples?", "role": "user" }, { "content": "RIT1", "role": "assistant" } ]
atomic_qa
train
c4dd875bc5680a42a0a3711110380438a9796ba9297fe5730c476126ed44239b
1
1
[ "Anatomy::UBERON:0000057", "Gene::6016" ]
[ "dd7ba2cfa5085bb3249e2124fe77a4a3b6d7d4edf1654c506975d95a84770315" ]
[ { "edge_id": "dd7ba2cfa5085bb3249e2124fe77a4a3b6d7d4edf1654c506975d95a84770315", "source_id": "Anatomy::UBERON:0000057", "source_name": "urethra", "relation_id": "Anatomy-upregulates-Gene", "target_id": "Gene::6016", "target_name": "RIT1" } ]
[ "Gene::6016" ]
[ "Anatomy-upregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 13}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Bgee", "Entrez Gene", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0", "UNSPECIFIED" ]
{}
b79a1c359eed006032163fa08593e1de26b9a5e1e52e24dac4d3e9a9957f1728
[ { "content": "Which disease is treated with the disease-modifying compound Prednisolone?", "role": "user" }, { "content": "ulcerative colitis", "role": "assistant" } ]
atomic_qa
train
03409731a01fae6c8fd37d4ddccdc88751f195f136a844c67cb2dfedda7712dc
1
1
[ "Compound::DB00860", "Disease::DOID:8577" ]
[ "a04a60233324c1b8d4de6acff714bfe12de56fbc35ce37ecc01ea9fea3f71cba" ]
[ { "edge_id": "a04a60233324c1b8d4de6acff714bfe12de56fbc35ce37ecc01ea9fea3f71cba", "source_id": "Compound::DB00860", "source_name": "Prednisolone", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:8577", "target_name": "ulcerative colitis" } ]
[ "Disease::DOID:8577" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
4118a24db03a9dcdc595701e537c63b2edbbc03b52ee886d019743e9950182d0
[ { "content": "Which cellular component does the product of PDLIM7 participate in?", "role": "user" }, { "content": "actin filament bundle", "role": "assistant" } ]
atomic_qa
train
2186c207fb4d99e0f8ba9ef61a531e724b03ab9c3b0474a6632a5f64392964e4
1
1
[ "Gene::9260", "Cellular Component::GO:0032432" ]
[ "2a21dc9673486483334d37f837ed7878a7dcc1a4c503a6181029d9a132e73f57" ]
[ { "edge_id": "2a21dc9673486483334d37f837ed7878a7dcc1a4c503a6181029d9a132e73f57", "source_id": "Gene::9260", "source_name": "PDLIM7", "relation_id": "Gene-participates-Cellular Component", "target_id": "Cellular Component::GO:0032432", "target_name": "actin filament bundle" } ]
[ "Cellular Component::GO:0032432" ]
[ "Gene-participates-Cellular Component" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 13}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Entrez Gene", "Gene Ontology", "NCBI gene2go" ]
[ "CC BY 4.0", "CC0 1.0" ]
{}
60472b0940ded2eaec5111a074af73793f325c5d35b1a811d2a21b780d1e1715
[ { "content": "Which disease does medroxyprogesterone acetate palliate symptoms of?", "role": "user" }, { "content": "Breast cancer.", "role": "assistant" } ]
atomic_qa
train
ee6e1ffa9fadbc19f349a841c7f62417ce067c2e7fb209e7f0c6f09d8b2b2308
1
1
[ "Compound::DB00603", "Disease::DOID:1612" ]
[ "0ca5ca6e323a04904bcf72a023aba7fc64c8681e13be5e0f5db08391d7aeadfe" ]
[ { "edge_id": "0ca5ca6e323a04904bcf72a023aba7fc64c8681e13be5e0f5db08391d7aeadfe", "source_id": "Compound::DB00603", "source_name": "Medroxyprogesterone Acetate", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:1612", "target_name": "breast cancer" } ]
[ "Disease::DOID:1612" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
cdad801066dc0a72ccb5b2c82f4efc3a8009ae73dc59ac0c07a52913def9f344
[ { "content": "Which disease resembles alopecia areata?", "role": "user" }, { "content": "vitiligo", "role": "assistant" } ]
atomic_qa
train
c9a33449bcd31218bf630c7f855f24132f09de6f3df8f1b64b6bb959580cedea
1
1
[ "Disease::DOID:986", "Disease::DOID:12306" ]
[ "3a991c91d9eca5278790408a244906480c30fd32bc7a69ecb60d447be3d5fba5" ]
[ { "edge_id": "3a991c91d9eca5278790408a244906480c30fd32bc7a69ecb60d447be3d5fba5", "source_id": "Disease::DOID:986", "source_name": "alopecia areata", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:12306", "target_name": "vitiligo" } ]
[ "Disease::DOID:12306" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 6}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
d824ff3118f9c5fbd091faeb60ad1c552f6aac641d2122b333b59d4da8e94a46
[ { "content": "Which disease does atropine palliate symptoms of?", "role": "user" }, { "content": "Parkinson's disease", "role": "assistant" } ]
atomic_qa
train
beb654961b973820ba9c157abc351a153a4615c063377ced50a904a3f9df6d46
1
1
[ "Compound::DB00572", "Disease::DOID:14330" ]
[ "8c37df759f2ceb15824b7b2b3d6c76b990f1df074f149798638ecc435141ca30" ]
[ { "edge_id": "8c37df759f2ceb15824b7b2b3d6c76b990f1df074f149798638ecc435141ca30", "source_id": "Compound::DB00572", "source_name": "Atropine", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:14330", "target_name": "Parkinson's disease" } ]
[ "Disease::DOID:14330" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
ed95f62a2cb9f5dd75e8ab52ffc6874eb5d8709713e405a27d737cd6d1b2ff3c
[ { "content": "Which gene is downregulated after exposure to Treprostinil?", "role": "user" }, { "content": "RRP7A", "role": "assistant" } ]
atomic_qa
train
88b4362df0758bdc20bcfe6d08aefb517d07d18b35a808f7c8cfacd460026528
1
1
[ "Compound::DB00374", "Gene::27341" ]
[ "7121507bdcbf2b4d65458632c36ba3a36cb872d680ff9110ae409ddeeac39705" ]
[ { "edge_id": "7121507bdcbf2b4d65458632c36ba3a36cb872d680ff9110ae409ddeeac39705", "source_id": "Compound::DB00374", "source_name": "Treprostinil", "relation_id": "Compound-downregulates-Gene", "target_id": "Gene::27341", "target_name": "RRP7A" } ]
[ "Gene::27341" ]
[ "Compound-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "LINCS L1000" ]
[ "CC BY-NC 4.0", "CC0 1.0", "UNSPECIFIED" ]
{}
677adc9c418fb0142b44fb28059b5409ad7ab7c10ad5c026dcbf4b27b30521a4
[ { "content": "Which disease resembles hypertension?", "role": "user" }, { "content": "metabolic syndrome X", "role": "assistant" } ]
atomic_qa
train
efb90bafa1cf383b55bcfd4c99d6c06042857af1524bd1bed87be26761619abf
1
1
[ "Disease::DOID:10763", "Disease::DOID:14221" ]
[ "2d1c77dee8b2f32e58254a15700ebd99be7ac2509cdb5fcc1ac976424726705b" ]
[ { "edge_id": "2d1c77dee8b2f32e58254a15700ebd99be7ac2509cdb5fcc1ac976424726705b", "source_id": "Disease::DOID:10763", "source_name": "hypertension", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:14221", "target_name": "metabolic syndrome X" } ]
[ "Disease::DOID:14221" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
9d5d3bece00bdd6e27989bc2e28c33187cd23763bd7471fe336d2400f8bf7b31
[ { "content": "Which gene's protein product is bound by glycine?", "role": "user" }, { "content": "AGXT2", "role": "assistant" } ]
atomic_qa
train
5df2435d8ae03ece77ce026ad64470ed6ee6d78381dd0e2871e0cc685007e1c4
1
1
[ "Compound::DB00145", "Gene::64902" ]
[ "b6d8a239fa1933fbf58e41f8c18e3287a1b70f3ebf18e26de9c990f2b30171ce" ]
[ { "edge_id": "b6d8a239fa1933fbf58e41f8c18e3287a1b70f3ebf18e26de9c990f2b30171ce", "source_id": "Compound::DB00145", "source_name": "Glycine", "relation_id": "Compound-binds-Gene", "target_id": "Gene::64902", "target_name": "AGXT2" } ]
[ "Gene::64902" ]
[ "Compound-binds-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "UNSPECIFIED" ]
[ "CC BY-NC 4.0", "CC0 1.0" ]
{}
12578089d1c23f51f87bc0306764102860e91f7d75188c97fa604a5aa567d672
[ { "content": "Which disease does diclofenac palliate symptoms of?", "role": "user" }, { "content": "rheumatoid arthritis", "role": "assistant" } ]
atomic_qa
train
e39524581b2db0001edc5babb2a8a6d2ddcb7579c83d784d0a823bfcc623262e
1
1
[ "Compound::DB00586", "Disease::DOID:7148" ]
[ "ec1ac07a94a6970598e7c496f886d5dfdc8d10cf9a57fb549ad6e2602821ec37" ]
[ { "edge_id": "ec1ac07a94a6970598e7c496f886d5dfdc8d10cf9a57fb549ad6e2602821ec37", "source_id": "Compound::DB00586", "source_name": "Diclofenac", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:7148", "target_name": "rheumatoid arthritis" } ]
[ "Disease::DOID:7148" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
c3e1688634c2c39c28f449819e0a11f70de649cd1e6ead681b54866d760eec10
[ { "content": "Which symptom can psoriasis present with?", "role": "user" }, { "content": "Fever", "role": "assistant" } ]
atomic_qa
train
1dda61d39c43ff81db30fcdeac4886d4d46ddeccd6580b6a428c0f3cc6580a3b
1
1
[ "Disease::DOID:8893", "Symptom::D005334" ]
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[ { "edge_id": "bc417d5ce4ecdb7387c271284cea03d37ad57aae8ec46d930f8a9caaf7ed31f1", "source_id": "Disease::DOID:8893", "source_name": "psoriasis", "relation_id": "Disease-presents-Symptom", "target_id": "Symptom::D005334", "target_name": "Fever" } ]
[ "Symptom::D005334" ]
[ "Disease-presents-Symptom" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "MeSH" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
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[ { "content": "Which anatomy is migraine localized to?", "role": "user" }, { "content": "Pons", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Disease::DOID:6364", "Anatomy::UBERON:0000988" ]
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[ { "edge_id": "3239ecb0b0e200f00f7883c0d97178b305dd9b5662ffdc0007ee3603147df1d1", "source_id": "Disease::DOID:6364", "source_name": "migraine", "relation_id": "Disease-localizes-Anatomy", "target_id": "Anatomy::UBERON:0000988", "target_name": "pons" } ]
[ "Anatomy::UBERON:0000988" ]
[ "Disease-localizes-Anatomy" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
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[ { "content": "Which disease does Amantadine palliate symptoms of?", "role": "user" }, { "content": "Parkinson's disease", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Compound::DB00915", "Disease::DOID:14330" ]
[ "151542651754ad5b1c5ab44a07acb41114a1ca5ddd28965452c9c75c9a98d433" ]
[ { "edge_id": "151542651754ad5b1c5ab44a07acb41114a1ca5ddd28965452c9c75c9a98d433", "source_id": "Compound::DB00915", "source_name": "Amantadine", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:14330", "target_name": "Parkinson's disease" } ]
[ "Disease::DOID:14330" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
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[ { "content": "Which gene is under-expressed in samples of psoriasis?", "role": "user" }, { "content": "MARCH6", "role": "assistant" } ]
atomic_qa
train
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1
1
[ "Disease::DOID:8893", "Gene::10299" ]
[ "976de21f22ef2e4fc698f66f63051212601e09054f8c64264624af958786aee3" ]
[ { "edge_id": "976de21f22ef2e4fc698f66f63051212601e09054f8c64264624af958786aee3", "source_id": "Disease::DOID:8893", "source_name": "psoriasis", "relation_id": "Disease-downregulates-Gene", "target_id": "Gene::10299", "target_name": "MARCH6" } ]
[ "Gene::10299" ]
[ "Disease-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "STARGEO" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
3193c42c2f325c4b9008181ed58113adcb2688b5c7d78ee995082755e39b2d01
[ { "content": "Which disease is Brinzolamide a treatment for?", "role": "user" }, { "content": "glaucoma", "role": "assistant" } ]
atomic_qa
train
a09a48b958e2d3e3965ed3c4f2b61c1f16ab1b6fec8ba0695665b38a65cd38b3
1
1
[ "Compound::DB01194", "Disease::DOID:1686" ]
[ "7de0e8bf0b3608daa14af11d77491a758c92de0b4e10db590638289fd2e0f914" ]
[ { "edge_id": "7de0e8bf0b3608daa14af11d77491a758c92de0b4e10db590638289fd2e0f914", "source_id": "Compound::DB01194", "source_name": "Brinzolamide", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:1686", "target_name": "glaucoma" } ]
[ "Disease::DOID:1686" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
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[ { "content": "Which disease resembles mediastinal cancer?", "role": "user" }, { "content": "testicular cancer", "role": "assistant" } ]
atomic_qa
train
2fc8c860db0588d961516a26fb2ba9769e909fd82e75011c417f7f87c1e8546c
1
1
[ "Disease::DOID:5559", "Disease::DOID:2998" ]
[ "6b6003c72525cebb4c2850dac3f988d1b5033fd4bea4eb274cc3812bda8bb386" ]
[ { "edge_id": "6b6003c72525cebb4c2850dac3f988d1b5033fd4bea4eb274cc3812bda8bb386", "source_id": "Disease::DOID:5559", "source_name": "mediastinal cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:2998", "target_name": "testicular cancer" } ]
[ "Disease::DOID:2998" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
7a9a9151134140be2b84f895e68dd3b528f78d5de40e3ccb69c21d1913cae74d
[ { "content": "Which gene's protein product does Fentanyl bind?", "role": "user" }, { "content": "OPRM1", "role": "assistant" } ]
atomic_qa
train
2e6ee6d5065570b5554e869491078246cd45fe3d8b7481b791389272380d3bdc
1
1
[ "Compound::DB00813", "Gene::4988" ]
[ "37912b86213289400e390f567994a36f965af47a0c04e4bb9d8b2a3679914db0" ]
[ { "edge_id": "37912b86213289400e390f567994a36f965af47a0c04e4bb9d8b2a3679914db0", "source_id": "Compound::DB00813", "source_name": "Fentanyl", "relation_id": "Compound-binds-Gene", "target_id": "Gene::4988", "target_name": "OPRM1" } ]
[ "Gene::4988" ]
[ "Compound-binds-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "Entrez Gene", "UNSPECIFIED" ]
[ "CC BY-NC 4.0", "CC BY-SA 3.0", "CC0 1.0" ]
{}
583e1abaa1691dc6bbf8964e45936f7ebae1353ae7a5a08bed40a6558f4483e1
[ { "content": "Which compound chemically resembles alvimopan?", "role": "user" }, { "content": "Benazepril", "role": "assistant" } ]
atomic_qa
train
b5b38a0e325647671036bd4d14cd14af2e3795c9f59eed385decc0fc364f3e66
1
1
[ "Compound::DB06274", "Compound::DB00542" ]
[ "2f7dae5a65d6c4b3a06c4d33186a18638cdec0203727c7998e9b0893db8b282e" ]
[ { "edge_id": "2f7dae5a65d6c4b3a06c4d33186a18638cdec0203727c7998e9b0893db8b282e", "source_id": "Compound::DB06274", "source_name": "Alvimopan", "relation_id": "Compound-resembles-Compound", "target_id": "Compound::DB00542", "target_name": "Benazepril" } ]
[ "Compound::DB00542" ]
[ "Compound-resembles-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 6}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Dice similarity of ECFPs", "DrugBank" ]
[ "CC BY-NC 4.0", "CC0 1.0" ]
{}
2856dc90951bc13e25029ecaff0fc8c68e7755ff1e9055bcc081df5c49996db8
[ { "content": "Which disease resembles bipolar disorder?", "role": "user" }, { "content": "Panic disorder", "role": "assistant" } ]
atomic_qa
train
14fab33d2a495b216a4c39e64993ab10fc174975c0271df986b0b5a9d2e533ab
1
1
[ "Disease::DOID:3312", "Disease::DOID:594" ]
[ "a27b2b0ebc4c8dcc5cc40a7dadb8d199fa13f7bd27a0797730ba4e1b2403b6f3" ]
[ { "edge_id": "a27b2b0ebc4c8dcc5cc40a7dadb8d199fa13f7bd27a0797730ba4e1b2403b6f3", "source_id": "Disease::DOID:3312", "source_name": "bipolar disorder", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:594", "target_name": "panic disorder" } ]
[ "Disease::DOID:594" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
9e6d66a8337c0ea85dcbeba543f811ae2a4272a13c22130a9ab534afc7cfad53
[ { "content": "Which compound is included in the pharmacologic class Photosensitizing Activity?", "role": "user" }, { "content": "Methoxsalen", "role": "assistant" } ]
atomic_qa
train
e70de221fb87730f02728914783635c2516eccecdd91f80273d5459719ac8ea6
1
1
[ "Pharmacologic Class::N0000009801", "Compound::DB00553" ]
[ "6e0d8a2df9bb64a6152fa7e98775dd10c5d0230c0426c769c5e2926f43c67856" ]
[ { "edge_id": "6e0d8a2df9bb64a6152fa7e98775dd10c5d0230c0426c769c5e2926f43c67856", "source_id": "Pharmacologic Class::N0000009801", "source_name": "Photosensitizing Activity", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00553", "target_name": "Methoxsalen"...
[ "Compound::DB00553" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
6b0bffcfee84967df24a05b11290d79cf6d6760b7d2f83d1a60884416f82075a
[ { "content": "Which disease is palliated by Dextromethorphan?", "role": "user" }, { "content": "multiple sclerosis", "role": "assistant" } ]
atomic_qa
train
a4cd094b149bc974f1cda930506d2dff2736d2a1f332adea8cc339d3c133bdf6
1
1
[ "Compound::DB00514", "Disease::DOID:2377" ]
[ "59683b226486bd18445c52a41acb13748ca1cf068b42ff786a12f7f1ec73754e" ]
[ { "edge_id": "59683b226486bd18445c52a41acb13748ca1cf068b42ff786a12f7f1ec73754e", "source_id": "Compound::DB00514", "source_name": "Dextromethorphan", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:2377", "target_name": "multiple sclerosis" } ]
[ "Disease::DOID:2377" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
82f940bf7dc98caee9ff84ed8c77a8bc5974db0bf5e1af376ac3888ffff4ad76
[ { "content": "Which disease is treated with acetazolamide?", "role": "user" }, { "content": "epilepsy syndrome", "role": "assistant" } ]
atomic_qa
train
913c8cb2a38b96b0546f75e68bcd93d7a5e15b211fac98f1526af26fadddcdd9
1
1
[ "Compound::DB00819", "Disease::DOID:1826" ]
[ "1352b4fd526c4859610e70caaa5aa663bdb13ffa3912b2018c51fff587258ef6" ]
[ { "edge_id": "1352b4fd526c4859610e70caaa5aa663bdb13ffa3912b2018c51fff587258ef6", "source_id": "Compound::DB00819", "source_name": "Acetazolamide", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:1826", "target_name": "epilepsy syndrome" } ]
[ "Disease::DOID:1826" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
2ef3a151f9306cc76b947f20e895e5d9d3a97ab5f004b36750a50541a9ba7d21
[ { "content": "Which gene is regulated by PMPCB?", "role": "user" }, { "content": "TBXA2R", "role": "assistant" } ]
atomic_qa
train
75a9249cb90021df65d4e63490172334a6a7a7a890c121da409dac580ebca3a3
1
1
[ "Gene::9512", "Gene::6915" ]
[ "4d29cbf155ff8948100f197e8c18ca2392ab53204716a057bd3f4a0900a2d40e" ]
[ { "edge_id": "4d29cbf155ff8948100f197e8c18ca2392ab53204716a057bd3f4a0900a2d40e", "source_id": "Gene::9512", "source_name": "PMPCB", "relation_id": "Gene-regulates-Gene", "target_id": "Gene::6915", "target_name": "TBXA2R" } ]
[ "Gene::6915" ]
[ "Gene-regulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Entrez Gene", "LINCS L1000" ]
[ "CC0 1.0", "UNSPECIFIED" ]
{}
46925d1317c7dbee0417667ed487272b943f2fa7e1e41df46a0427d2630aa341
[ { "content": "Which disease resembles Barrett's esophagus?", "role": "user" }, { "content": "Stomach cancer.", "role": "assistant" } ]
atomic_qa
train
a6ef0784942c8ed5735ba046f65171960f35c7ef4caa7d44721c3637a572e9c2
1
1
[ "Disease::DOID:9206", "Disease::DOID:10534" ]
[ "c410648d22008d00a0a6631c741f79b47d27f577f14797ce38959130b7193d0d" ]
[ { "edge_id": "c410648d22008d00a0a6631c741f79b47d27f577f14797ce38959130b7193d0d", "source_id": "Disease::DOID:9206", "source_name": "Barrett's esophagus", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:10534", "target_name": "stomach cancer" } ]
[ "Disease::DOID:10534" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
1992d65fa07bb0f24738362f3defb379f2e882891cb488f67f3e69d62f6c3ba5
[ { "content": "What symptom is associated with age related macular degeneration?", "role": "user" }, { "content": "Miosis", "role": "assistant" } ]
atomic_qa
train
2701f1e27d01dde88bf378f19e50a934952d6796c9912925deaeabc0f3c61f2a
1
1
[ "Disease::DOID:10871", "Symptom::D015877" ]
[ "fadcbb841baf175551a492be63541b98b22e83fc70c74da783c3fe529d64ffc7" ]
[ { "edge_id": "fadcbb841baf175551a492be63541b98b22e83fc70c74da783c3fe529d64ffc7", "source_id": "Disease::DOID:10871", "source_name": "age related macular degeneration", "relation_id": "Disease-presents-Symptom", "target_id": "Symptom::D015877", "target_name": "Miosis" } ]
[ "Symptom::D015877" ]
[ "Disease-presents-Symptom" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "MeSH" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
f24b1ee472cfc4fe3dde22f5d28091682534f2171f8d2bf26479db38ae760505
[ { "content": "What molecular function does the SLC1A1 gene participate in?", "role": "user" }, { "content": "inorganic cation transmembrane transporter activity", "role": "assistant" } ]
atomic_qa
train
ebd26437955a91a780b6c0ad5ba9768d07414cafb3c84b5dd0e65ab05a2f0705
1
1
[ "Gene::6505", "Molecular Function::GO:0022890" ]
[ "438db70cdcda5f44499ae6e87e2047ff8da51fdb8ab111086a8ab12b10fbb79f" ]
[ { "edge_id": "438db70cdcda5f44499ae6e87e2047ff8da51fdb8ab111086a8ab12b10fbb79f", "source_id": "Gene::6505", "source_name": "SLC1A1", "relation_id": "Gene-participates-Molecular Function", "target_id": "Molecular Function::GO:0022890", "target_name": "inorganic cation transmembrane transporte...
[ "Molecular Function::GO:0022890" ]
[ "Gene-participates-Molecular Function" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 14}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Entrez Gene", "Gene Ontology", "NCBI gene2go" ]
[ "CC BY 4.0", "CC0 1.0" ]
{}
e29203c42aec2094bbe423a8ac0a6f25f6cd3462cc27afada1eb0602e62221d6
[ { "content": "Which anatomy is associated with meningioma?", "role": "user" }, { "content": "oculomotor nerve", "role": "assistant" } ]
atomic_qa
train
c99a398127b4dca242456353253b997a999f25fe7bfbc050deb39424e1f70761
1
1
[ "Disease::DOID:3565", "Anatomy::UBERON:0001643" ]
[ "6d95250f813ffb56f09840e5cdf7e597123ea13b1b9b5e0d4cc5e238f12b7217" ]
[ { "edge_id": "6d95250f813ffb56f09840e5cdf7e597123ea13b1b9b5e0d4cc5e238f12b7217", "source_id": "Disease::DOID:3565", "source_name": "meningioma", "relation_id": "Disease-localizes-Anatomy", "target_id": "Anatomy::UBERON:0001643", "target_name": "oculomotor nerve" } ]
[ "Anatomy::UBERON:0001643" ]
[ "Disease-localizes-Anatomy" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
c35845a48c620dd7850ab82bd586364a6721f59ab9c577b6402a05280da8b473
[ { "content": "Which anatomy is associated with epilepsy syndrome by localization?", "role": "user" }, { "content": "pia mater", "role": "assistant" } ]
atomic_qa
train
21f960f89b0cf677687fd52110ee88b77870c28fc4f2c40929521960095626b4
1
1
[ "Disease::DOID:1826", "Anatomy::UBERON:0002361" ]
[ "418cee5d89ad56f1a4aa3db04e1a7089851621e70f5b43ca6a66de9b9adb855a" ]
[ { "edge_id": "418cee5d89ad56f1a4aa3db04e1a7089851621e70f5b43ca6a66de9b9adb855a", "source_id": "Disease::DOID:1826", "source_name": "epilepsy syndrome", "relation_id": "Disease-localizes-Anatomy", "target_id": "Anatomy::UBERON:0002361", "target_name": "pia mater" } ]
[ "Anatomy::UBERON:0002361" ]
[ "Disease-localizes-Anatomy" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
79c43938a31e021d0760025b4f57a1b0739f28eae033d97b6d0e9c3e9844b533
[ { "content": "What disease resembles gestational diabetes?", "role": "user" }, { "content": "Type 2 diabetes mellitus", "role": "assistant" } ]
atomic_qa
train
b05c4a67e7216a47c8d893c01b1b3a38f7efda774fff6cdbc7863e79964d7e00
1
1
[ "Disease::DOID:11714", "Disease::DOID:9352" ]
[ "4e6b9983c1456759c276b89633ebde79b9895c33d1e7f943e226635b2a0927bf" ]
[ { "edge_id": "4e6b9983c1456759c276b89633ebde79b9895c33d1e7f943e226635b2a0927bf", "source_id": "Disease::DOID:11714", "source_name": "gestational diabetes", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:9352", "target_name": "type 2 diabetes mellitus" } ]
[ "Disease::DOID:9352" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
b1f0cc330a9e97eaf36d2e3a89112d3d7d5c5e5879a71e8f6c36382a4f4776ca
[ { "content": "Which compound is included in the pharmacologic class Prostaglandins?", "role": "user" }, { "content": "Bimatoprost", "role": "assistant" } ]
atomic_qa
train
a0872a7268bb02f0dd72f40889cd3650c1076a9acd8e62445dbc9b980254dedc
1
1
[ "Pharmacologic Class::N0000007706", "Compound::DB00905" ]
[ "f55861e7d9a5fdd49ae37c3332d4a9cecd4d23bbf290a86469da8d467aace665" ]
[ { "edge_id": "f55861e7d9a5fdd49ae37c3332d4a9cecd4d23bbf290a86469da8d467aace665", "source_id": "Pharmacologic Class::N0000007706", "source_name": "Prostaglandins", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB00905", "target_name": "Bimatoprost" } ]
[ "Compound::DB00905" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
0746c86f58bf7e276ebc3c20146e3bec77dbdab6fa7972976c3307db7fe9090c
[ { "content": "Which disease resembles Alzheimer's disease?", "role": "user" }, { "content": "Parkinson's disease", "role": "assistant" } ]
atomic_qa
train
20aed57fb6b0aa557b213b04db88e355a779268a935431e5012dd53f6f0dfa7a
1
1
[ "Disease::DOID:10652", "Disease::DOID:14330" ]
[ "f6a58269198d5d45907d90e266a2733644ed19e2863d5d880de4cef60f32bb09" ]
[ { "edge_id": "f6a58269198d5d45907d90e266a2733644ed19e2863d5d880de4cef60f32bb09", "source_id": "Disease::DOID:10652", "source_name": "Alzheimer's disease", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:14330", "target_name": "Parkinson's disease" } ]
[ "Disease::DOID:14330" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
3e0e60076592221bd7b531d75866babf589f617ff7d5abab2520d948dfa6eb70
[ { "content": "Which disease is palliated by carbidopa?", "role": "user" }, { "content": "Restless legs syndrome.", "role": "assistant" } ]
atomic_qa
train
4dede239aa69e0e99a06de14eb58a980f53dd30cc2db5d482f1b4e3bab41c2f7
1
1
[ "Compound::DB00190", "Disease::DOID:0050425" ]
[ "b358d54eafd8e5b00468c94e683b179fab3abb17402e520661e9d232c4ba4163" ]
[ { "edge_id": "b358d54eafd8e5b00468c94e683b179fab3abb17402e520661e9d232c4ba4163", "source_id": "Compound::DB00190", "source_name": "Carbidopa", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:0050425", "target_name": "restless legs syndrome" } ]
[ "Disease::DOID:0050425" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
297ffb00697521de11ec3f56e865e3730691067304130f1525a6dd58a36cbee2
[ { "content": "Which disease is similar to head and neck cancer?", "role": "user" }, { "content": "melanoma", "role": "assistant" } ]
atomic_qa
train
52e0d908556e2eba5637681391811514b2a11a062689391cb9facae8ab81816a
1
1
[ "Disease::DOID:11934", "Disease::DOID:1909" ]
[ "837bfa01502b8c86c285f232045f030ecafc3a53f888f5a3fc8fdb811431c5e0" ]
[ { "edge_id": "837bfa01502b8c86c285f232045f030ecafc3a53f888f5a3fc8fdb811431c5e0", "source_id": "Disease::DOID:11934", "source_name": "head and neck cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:1909", "target_name": "melanoma" } ]
[ "Disease::DOID:1909" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 10}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
2e889ec54eed0557626cbd709b2fb9372c552eb257f291a4a24f7490fc556ba2
[ { "content": "Which disease is Nisoldipine used to treat?", "role": "user" }, { "content": "Hypertension", "role": "assistant" } ]
atomic_qa
train
7c072968ebd08f8d5a20f36c740fdb4376a81889a2e11903dae812763ee828bd
1
1
[ "Compound::DB00401", "Disease::DOID:10763" ]
[ "bdacc542dd99c829aff8715cc8ef3634a3cdd847c07d907d30ebdca06ef9517e" ]
[ { "edge_id": "bdacc542dd99c829aff8715cc8ef3634a3cdd847c07d907d30ebdca06ef9517e", "source_id": "Compound::DB00401", "source_name": "Nisoldipine", "relation_id": "Compound-treats-Disease", "target_id": "Disease::DOID:10763", "target_name": "hypertension" } ]
[ "Disease::DOID:10763" ]
[ "Compound-treats-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
c2d254a87379d12c319e2a22899df1389a5a6adbaf99fca39aeb747933ad4683
[ { "content": "Which compound is included in the pharmacologic class of diarylquinolines?", "role": "user" }, { "content": "Bedaquiline", "role": "assistant" } ]
atomic_qa
train
04def1ba9a2147cb5be5f6daf86a71695e29eff8f062991d88bdb48d631bd76f
1
1
[ "Pharmacologic Class::N0000186774", "Compound::DB08903" ]
[ "1fe917d153f18e66f165fb82b90594bc873da248968ecbac8a3dcf0afa8278ba" ]
[ { "edge_id": "1fe917d153f18e66f165fb82b90594bc873da248968ecbac8a3dcf0afa8278ba", "source_id": "Pharmacologic Class::N0000186774", "source_name": "Diarylquinolines", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB08903", "target_name": "Bedaquiline" } ]
[ "Compound::DB08903" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
70ae445737a84bdf889a1b93c416cbad6c22da09028d5f66e422c7ee99b6f30c
[ { "content": "What disease resembles esophageal cancer?", "role": "user" }, { "content": "rectum cancer", "role": "assistant" } ]
atomic_qa
train
d4e0da7196ce41fc35985e5b19d898fdb3580872451c92abdf7b3792760c800b
1
1
[ "Disease::DOID:5041", "Disease::DOID:1993" ]
[ "a5ca52eca7535f9caa0c5645ea6e8c933524e7c4d8a00378433ee5923836b8ea" ]
[ { "edge_id": "a5ca52eca7535f9caa0c5645ea6e8c933524e7c4d8a00378433ee5923836b8ea", "source_id": "Disease::DOID:5041", "source_name": "esophageal cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:1993", "target_name": "rectum cancer" } ]
[ "Disease::DOID:1993" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
cda73aa3f338ea80b829e74f9789e53d39a827736f1e2fdf68927155606d6c40
[ { "content": "Which compound chemically resembles Chlorcyclizine?", "role": "user" }, { "content": "Chlorphenamine", "role": "assistant" } ]
atomic_qa
train
2de5dcf7c95a12d1910fcf690322c2c4d493a96b24d432ac7392a7e8d7571fae
1
1
[ "Compound::DB08936", "Compound::DB01114" ]
[ "0c003df4d8a395eacdbd80d2ce70e9b27cdab4b8bfec93950740eee2462c3bf4" ]
[ { "edge_id": "0c003df4d8a395eacdbd80d2ce70e9b27cdab4b8bfec93950740eee2462c3bf4", "source_id": "Compound::DB08936", "source_name": "Chlorcyclizine", "relation_id": "Compound-resembles-Compound", "target_id": "Compound::DB01114", "target_name": "Chlorphenamine" } ]
[ "Compound::DB01114" ]
[ "Compound-resembles-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 6}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Dice similarity of ECFPs", "DrugBank" ]
[ "CC BY-NC 4.0", "CC0 1.0" ]
{}
49aa8ff325bdcd2d44a38c0a416545ec1f2ae35e13d0dfb2e1675685b49530c5
[ { "content": "Which gene is over-expressed in adipose tissue in post-juvenile adult human samples?", "role": "user" }, { "content": "IFIT1B", "role": "assistant" } ]
atomic_qa
train
9e80e4c949867e4437d5487344af930d890df629cea0d1db61604446398d2bda
1
1
[ "Anatomy::UBERON:0001013", "Gene::439996" ]
[ "4b7ead8c4ac6298d75b4b18089d86854758e80bd851134cfa459fd6d6f70669e" ]
[ { "edge_id": "4b7ead8c4ac6298d75b4b18089d86854758e80bd851134cfa459fd6d6f70669e", "source_id": "Anatomy::UBERON:0001013", "source_name": "adipose tissue", "relation_id": "Anatomy-upregulates-Gene", "target_id": "Gene::439996", "target_name": "IFIT1B" } ]
[ "Gene::439996" ]
[ "Anatomy-upregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 13}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Bgee", "Entrez Gene", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0", "UNSPECIFIED" ]
{}
eff5fd873430a672aa2431806a683031063380f51ab62e11f49b897a00f58a74
[ { "content": "Which disease resembles duodenum cancer?", "role": "user" }, { "content": "peritoneum cancer", "role": "assistant" } ]
atomic_qa
train
91ca666322ff5711bba563a9e78ffef4bfb2d4bb8af693dbe3290e9d7864c481
1
1
[ "Disease::DOID:10021", "Disease::DOID:1725" ]
[ "c88efb6621ea0f878f87d544d973bd57f8ca119368202ab2f0d2a16ba7876cda" ]
[ { "edge_id": "c88efb6621ea0f878f87d544d973bd57f8ca119368202ab2f0d2a16ba7876cda", "source_id": "Disease::DOID:10021", "source_name": "duodenum cancer", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:1725", "target_name": "peritoneum cancer" } ]
[ "Disease::DOID:1725" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
8704d516ed8465488ef1f593faeb26e999ce125062a08830b5e8d41fa6c4bb74
[ { "content": "Which disease's symptoms are palliated by hyoscyamine?", "role": "user" }, { "content": "Parkinson's disease", "role": "assistant" } ]
atomic_qa
train
ae099323a2743d492d08a212afd2952806678983f92493463fd48fa1d5a128cf
1
1
[ "Compound::DB00424", "Disease::DOID:14330" ]
[ "6707cdc9c771d7ff44761f3cef9aa61293eeb3963e3ef8744bb704139f0ab2db" ]
[ { "edge_id": "6707cdc9c771d7ff44761f3cef9aa61293eeb3963e3ef8744bb704139f0ab2db", "source_id": "Compound::DB00424", "source_name": "Hyoscyamine", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:14330", "target_name": "Parkinson's disease" } ]
[ "Disease::DOID:14330" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 9}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
c0646a2938dee78d4c5753586e3a4e12334cedb38e3ac3b146c9b38a1d7d9b9c
[ { "content": "Which compound belongs to the pharmacologic class Norepinephrine Uptake Inhibitors?", "role": "user" }, { "content": "Milnacipran", "role": "assistant" } ]
atomic_qa
train
314ec78a36fab8d59771fe91367183ac9290f252d6f2d6389fbf7e8c0f150b70
1
1
[ "Pharmacologic Class::N0000000102", "Compound::DB04896" ]
[ "93f02b9556e8cead5c11608b38c058eaa9839ab69155783ce6c0d81cedf47ec9" ]
[ { "edge_id": "93f02b9556e8cead5c11608b38c058eaa9839ab69155783ce6c0d81cedf47ec9", "source_id": "Pharmacologic Class::N0000000102", "source_name": "Norepinephrine Uptake Inhibitors", "relation_id": "Pharmacologic Class-includes-Compound", "target_id": "Compound::DB04896", "target_name": "Milna...
[ "Compound::DB04896" ]
[ "Pharmacologic Class-includes-Compound" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 11}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "DrugBank", "DrugCentral", "FDA via DrugCentral" ]
[ "CC BY 4.0", "CC BY-NC 4.0" ]
{}
03f14561eab29de3b91948d035fbf9c7390da0201f54c7a862b1b38131cd5ac3
[ { "content": "Which gene is under-expressed in the lung in post-juvenile adult human samples?", "role": "user" }, { "content": "PRKDC", "role": "assistant" } ]
atomic_qa
train
293ec1b545d2a3abc293fc21e88e8c33a232f5935631b65836c655a3874338ca
1
1
[ "Anatomy::UBERON:0002048", "Gene::5591" ]
[ "015582f34a6b6e674adca5c014a3b12abe8ee5cd8b7fbb1e1ac5aa33fa73fb52" ]
[ { "edge_id": "015582f34a6b6e674adca5c014a3b12abe8ee5cd8b7fbb1e1ac5aa33fa73fb52", "source_id": "Anatomy::UBERON:0002048", "source_name": "lung", "relation_id": "Anatomy-downregulates-Gene", "target_id": "Gene::5591", "target_name": "PRKDC" } ]
[ "Gene::5591" ]
[ "Anatomy-downregulates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 13}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Bgee", "Entrez Gene", "Uberon" ]
[ "CC BY 3.0", "CC0 1.0", "UNSPECIFIED" ]
{}
57bd2535c847986687950ba38a20013f113b22c005344007237ffb79ea1f04a2
[ { "content": "Which disease is palliated by Prednisone?", "role": "user" }, { "content": "migraine", "role": "assistant" } ]
atomic_qa
train
9029edeedb0cb74d26167f605c3cddc489430f06a1715d45d2ec95e104ba9750
1
1
[ "Compound::DB00635", "Disease::DOID:6364" ]
[ "1378a96ca97fc0b43686224515b9881683bc5aaa4f8fc08c25dac8d3ed94de5b" ]
[ { "edge_id": "1378a96ca97fc0b43686224515b9881683bc5aaa4f8fc08c25dac8d3ed94de5b", "source_id": "Compound::DB00635", "source_name": "Prednisone", "relation_id": "Compound-palliates-Disease", "target_id": "Disease::DOID:6364", "target_name": "migraine" } ]
[ "Disease::DOID:6364" ]
[ "Compound-palliates-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 7}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "DrugBank", "PharmacotherapyDB" ]
[ "CC BY 3.0", "CC BY-NC 4.0", "CC0 1.0" ]
{}
5ab43c38a53a82177db27131a5e6c39ff557c12b848523930fe9d07b749d5d3f
[ { "content": "Which disease resembles amyotrophic lateral sclerosis?", "role": "user" }, { "content": "multiple sclerosis", "role": "assistant" } ]
atomic_qa
train
d7010bfc7d2da5860c9ce1984d9fbef0d3270944e8fddf2245afbaebd9512ee8
1
1
[ "Disease::DOID:332", "Disease::DOID:2377" ]
[ "06f49314feea0a83d78494b40c166b45339c7f4a642fd7dec4d258d2c9e70bfb" ]
[ { "edge_id": "06f49314feea0a83d78494b40c166b45339c7f4a642fd7dec4d258d2c9e70bfb", "source_id": "Disease::DOID:332", "source_name": "amyotrophic lateral sclerosis", "relation_id": "Disease-resembles-Disease", "target_id": "Disease::DOID:2377", "target_name": "multiple sclerosis" } ]
[ "Disease::DOID:2377" ]
[ "Disease-resembles-Disease" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "MEDLINE cooccurrence" ]
[ "CC BY 3.0", "CC0 1.0" ]
{}
6046a906807d7110aaaaf686dbf9c0de1f3ae41dd8442a5a25a43acec70e104d
[ { "content": "Which gene is associated with kidney cancer?", "role": "user" }, { "content": "ATP7B", "role": "assistant" } ]
atomic_qa
train
9b3016e873a992ac75c1c3fab307e5ca960ce34454b0285bc7fdef3238067a90
1
1
[ "Disease::DOID:263", "Gene::540" ]
[ "cf78e97b2c83591a669946b8c28c30525829f799de553a5dd05098242b5b19c0" ]
[ { "edge_id": "cf78e97b2c83591a669946b8c28c30525829f799de553a5dd05098242b5b19c0", "source_id": "Disease::DOID:263", "source_name": "kidney cancer", "relation_id": "Disease-associates-Gene", "target_id": "Gene::540", "target_name": "ATP7B" } ]
[ "Gene::540" ]
[ "Disease-associates-Gene" ]
none
llm
fixed-v2+natural-conversation-v2
Qwen/Qwen3.8-27B
{"deterministic": true, "message_tokens": 8}
hetionet
v1.0
a342ab57e9073e6c02bb5e109d1f16917e6f933be4e5c77ebbaebfa26b984c19
[ "Disease Ontology", "Entrez Gene", "UNSPECIFIED" ]
[ "CC BY 3.0", "CC0 1.0", "ODbL 1.0" ]
{}
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synth-kg-text: hetionet v1.0

This repository contains validated chat-style supervised fine-tuning data generated by synth-kg-text.

  • Source run: build-1000
  • Knowledge graph: hetionet v1.0
  • Generator model: Qwen/Qwen3.8-27B
  • Configuration hash: 544d91e7a68b3c49b4c67cede3242e449cbede8321ed47e843f1685de4321fdf

Splits

Split Rows
train 919
validation 44
test 37
seen_fact_unseen_phrasing derived evaluation subset
compositional derived evaluation subset

The metadata directory contains the resolved configuration, prompt snapshots, build manifest, and generation report needed to audit the run. Individual records retain graph provenance, licenses, grounding identifiers, and validation results.

Load

from datasets import load_dataset

dataset = load_dataset("giannor/auto-kg-text-1000")
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